TF_ChIP-seq_ENCSR279NEA
TF_ChIP-seq ENCSR279NEA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8" and target="AKAP8"]
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| Id: | TF_ChIP-seq/ENCSR279NEA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR279NEA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8" and target="AKAP8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN177PVZ|/analyses/ENCAN177PVZ/} has in progress subobject document {5e49deff-7632-4a95-9748-4009747dd882|/documents/5e49deff-7632-4a95-9748-4009747dd882/} audit_internal_action: Released analysis {ENCAN177PVZ|/analyses/ENCAN177PVZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117KAV|/files/ENCFF117KAV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117KAV|/files/ENCFF117KAV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.27. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF502EJK|/files/ENCFF502EJK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF502EJK|/files/ENCFF502EJK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR279NEA | float |
TF_ChIP-seq_ENCSR279NEA |
TF_ChIP-seq ENCSR279NEA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8" and target="AKAP8"]
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[11.4, 390] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716HAB.bed.gz | 253.83 KB | 9a410a5f04eb5d16cb74e953df3644fe |
| ENCFF716HAB.bed.gz.dvc | 100.0 B | c869db3313773f782e7156266a77a8a4 |
| ENCFF716HAB.tabix.bed.gz | 202.55 KB | b866f52d6ec0e44d9b49b65f3d8724b0 |
| ENCFF716HAB.tabix.bed.gz.dvc | 106.0 B | cc0da64d856d8ef4bd3587cd76550776 |
| ENCFF716HAB.tabix.bed.gz.tbi | 74.84 KB | 2e3617766043fb5e3bbc3067928e4a9c |
| ENCFF716HAB.tabix.bed.gz.tbi.dvc | 109.0 B | aaa75f5e2b14547c567d233fd0af6b95 |
| genomic_resource.yaml | 4.44 KB | d57a70a4bcff6ec7cc0b2d92a0363a45 |
| genomic_resource_original.yaml | 4.28 KB | 10510aabf4a9509df0c111a39bfbfa62 |
| statistics/ |