TF_ChIP-seq_ENCSR279IMD
TF_ChIP-seq ENCSR279IMD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"]
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| Id: | TF_ChIP-seq/ENCSR279IMD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR279IMD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN580HCD|/analyses/ENCAN580HCD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF868TWP|/files/ENCFF868TWP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF868TWP|/files/ENCFF868TWP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF641POX|/files/ENCFF641POX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF641POX|/files/ENCFF641POX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR279IMD | float |
TF_ChIP-seq_ENCSR279IMD |
TF_ChIP-seq ENCSR279IMD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4" and target="HMGXB4"]
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[9.61, 411] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF185KMK.bed.gz | 161.98 KB | e1531c7012325cca2ecb13643bf803ce |
| ENCFF185KMK.bed.gz.dvc | 100.0 B | b6822363d811acd09637d98455e87ed4 |
| ENCFF185KMK.tabix.bed.gz | 127.97 KB | 6d929c9daae2468430093878b0bf82f1 |
| ENCFF185KMK.tabix.bed.gz.dvc | 106.0 B | 9831f2c505779f8467cbdddae911c3fd |
| ENCFF185KMK.tabix.bed.gz.tbi | 55.08 KB | 38093c71fedafbd4834130955dc6a454 |
| ENCFF185KMK.tabix.bed.gz.tbi.dvc | 109.0 B | 6aad23db6fa5db2827f1f8cc59f56b9b |
| genomic_resource.yaml | 4.24 KB | 33e18a359d32da4731eedbd9dd0f000c |
| genomic_resource_original.yaml | 4.07 KB | 2ab6a9851c79a66f252687d10d1063fc |
| statistics/ |