TF_ChIP-seq_ENCSR277VXX
TF_ChIP-seq ENCSR277VXX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608" and target="ZNF608"]
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| Id: | TF_ChIP-seq/ENCSR277VXX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR277VXX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608" and target="ZNF608"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN623YNS|/analyses/ENCAN623YNS/} has in progress subobject document {cf9893a9-d3c9-4b1f-a278-a66407c4edfd|/documents/cf9893a9-d3c9-4b1f-a278-a66407c4edfd/} audit_internal_action: Released analysis {ENCAN623YNS|/analyses/ENCAN623YNS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF586YZC|/files/ENCFF586YZC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF586YZC|/files/ENCFF586YZC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR277VXX | float |
TF_ChIP-seq_ENCSR277VXX |
TF_ChIP-seq ENCSR277VXX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608" and target="ZNF608"]
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[11.3, 467] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF778FIE.bed.gz | 238.76 KB | 56b94f950a7e2afb72c557f40414d939 |
| ENCFF778FIE.bed.gz.dvc | 100.0 B | 9044b5c206f464b5d345b4c715755e63 |
| ENCFF778FIE.tabix.bed.gz | 184.61 KB | e9571d611980e2a14b1b554b138cea09 |
| ENCFF778FIE.tabix.bed.gz.dvc | 106.0 B | 1f837d8145dfe1f4ea2c4306f61466c7 |
| ENCFF778FIE.tabix.bed.gz.tbi | 79.44 KB | fb619ed788f2d4b5401be3b6b28eb0ac |
| ENCFF778FIE.tabix.bed.gz.tbi.dvc | 109.0 B | 63ce0351652c7059334dd090a8a2df86 |
| genomic_resource.yaml | 3.18 KB | eadffc7fc7045f506f3f4ed4301c7d43 |
| genomic_resource_original.yaml | 3.02 KB | d926d50f4096747913d1b6f0aab04ae6 |
| statistics/ |