TF_ChIP-seq_ENCSR277VIC
TF_ChIP-seq ENCSR277VIC [biosample_summary="Homo sapiens HepG2" and target="HDAC6"]
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| Id: | TF_ChIP-seq/ENCSR277VIC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR277VIC [biosamplesummary="Homo sapiens HepG2" and target="HDAC6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN672IDW|/analyses/ENCAN672IDW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF877ETL|/files/ENCFF877ETL/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 17836387 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HDAC6-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF043EPU|/files/ENCFF043EPU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 18566305 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HDAC6-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF877ETL|/files/ENCFF877ETL/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF877ETL|/files/ENCFF877ETL/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR277VIC | float |
TF_ChIP-seq_ENCSR277VIC |
TF_ChIP-seq ENCSR277VIC [biosample_summary="Homo sapiens HepG2" and target="HDAC6"]
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[5.3, 255] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF338JHW.bed.gz | 20.55 KB | d720f34fba85066ce078f040da30624d |
| ENCFF338JHW.bed.gz.dvc | 99.0 B | 1783402a6960570e1e0eb130b7b029cc |
| ENCFF338JHW.tabix.bed.gz | 15.15 KB | e6190b6f54c4bff2a4f506b19cdd3bf9 |
| ENCFF338JHW.tabix.bed.gz.dvc | 105.0 B | 42b61e0aa84d7401b96332c2b34a9b6e |
| ENCFF338JHW.tabix.bed.gz.tbi | 12.47 KB | 71a7f90d8553f587c1d58f49adcfeefa |
| ENCFF338JHW.tabix.bed.gz.tbi.dvc | 109.0 B | 3887a918445517b3d347fd27e5884b6e |
| genomic_resource.yaml | 3.66 KB | 60725d83c9f07a7c448ce9ffeceef6fd |
| genomic_resource_original.yaml | 3.56 KB | b98150a28892c784fd313b6a28221f9e |
| statistics/ |