TF_ChIP-seq_ENCSR277OOQ
TF_ChIP-seq ENCSR277OOQ [biosample_summary="Homo sapiens A549" and target="ZC3H11A"]
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| Id: | TF_ChIP-seq/ENCSR277OOQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR277OOQ [biosamplesummary="Homo sapiens A549" and target="ZC3H11A"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN151VIU|/analyses/ENCAN151VIU/} has in progress subobject document {b3ba251c-195b-4a08-a464-3e6414c02eea|/documents/b3ba251c-195b-4a08-a464-3e6414c02eea/} audit_internal_action: Released analysis {ENCAN151VIU|/analyses/ENCAN151VIU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF670HHF|/files/ENCFF670HHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF670HHF|/files/ENCFF670HHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR277OOQ | float |
TF_ChIP-seq_ENCSR277OOQ |
TF_ChIP-seq ENCSR277OOQ [biosample_summary="Homo sapiens A549" and target="ZC3H11A"]
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[12.2, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF390AZA.bed.gz | 144.75 KB | 58abecdd66d89098aa6d6dcda3513ba0 |
| ENCFF390AZA.bed.gz.dvc | 100.0 B | 374e10e1ea2f7dc7a347a456596b4184 |
| ENCFF390AZA.tabix.bed.gz | 97.46 KB | f39b0a14c2a40db9cad254f0d6474571 |
| ENCFF390AZA.tabix.bed.gz.dvc | 105.0 B | 31b6e30812a77cdcf2741f2546499ea4 |
| ENCFF390AZA.tabix.bed.gz.tbi | 77.22 KB | 871ab21c83d52c185ce768e30ac20ef2 |
| ENCFF390AZA.tabix.bed.gz.tbi.dvc | 109.0 B | 99305236e1828ed78519818af8474ae8 |
| genomic_resource.yaml | 2.88 KB | 09f3b5c19fb78a3357f097a21147cf9b |
| genomic_resource_original.yaml | 2.78 KB | 791c78e77a2e516cc1f273e6f4cd5bbe |
| statistics/ |