type: position_score
table:
  filename: ENCFF375BSV.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR275JVX
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR275JVX [biosample_summary="Homo sapiens with Alzheimer''''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR275JVX [biosample_summary="Homo sapiens with Alzheimer''''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="CTCF"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male adult (90 or above years) with Alzheimer''s disease


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN118SJE|/analyses/ENCAN118SJE/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF411FMB|/files/ENCFF411FMB/}
    processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 17414056 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR275JVX
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male adult (90 or above years) with Alzheimer's disease
    biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal
      cortex tissue male adult (90 or above years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0009834/
    perturbed: false
    doi: 10.17989/ENCSR275JVX
    date_created: '2022-05-11T01:53:47.317520+00:00'
    date_released: '2022-06-09'
    submitter_comment: ''
    target: CTCF
