TF_ChIP-seq_ENCSR272JAT
TF_ChIP-seq ENCSR272JAT [biosample_summary="Homo sapiens K562" and target="CBX5"]
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| Id: | TF_ChIP-seq/ENCSR272JAT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR272JAT [biosamplesummary="Homo sapiens K562" and target="CBX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN660EGB|/analyses/ENCAN660EGB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF715WCF|/files/ENCFF715WCF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19235569 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CBX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF066OJB|/files/ENCFF066OJB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 2.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR272JAT | float |
TF_ChIP-seq_ENCSR272JAT |
TF_ChIP-seq ENCSR272JAT [biosample_summary="Homo sapiens K562" and target="CBX5"]
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[5.33, 236] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF066OJB.bed.gz | 121.17 KB | b736a8c8e31dac7cd0d1e46489b5356b |
| ENCFF066OJB.bed.gz.dvc | 100.0 B | 6049eaf299271e7f9c3c692b82440e4c |
| ENCFF066OJB.tabix.bed.gz | 86.36 KB | deba808ac3b1833a9021e0851c10d750 |
| ENCFF066OJB.tabix.bed.gz.dvc | 105.0 B | 88c27faab7148ad30051e2e37e3f5fa7 |
| ENCFF066OJB.tabix.bed.gz.tbi | 61.86 KB | 8bfed94470ea7f307b70b0e4176f0389 |
| ENCFF066OJB.tabix.bed.gz.tbi.dvc | 109.0 B | d03196eb240d3a9e34288814931a2a95 |
| genomic_resource.yaml | 2.38 KB | 8afb362bcd2083ba4a71596c42fa6359 |
| genomic_resource_original.yaml | 2.28 KB | e02007895be0f439929e0051957dfdbd |
| statistics/ |