TF_ChIP-seq_ENCSR271XMW
TF_ChIP-seq ENCSR271XMW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR271XMW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR271XMW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EP300 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN903TTU|/analyses/ENCAN903TTU/} has in progress subobject document {c469e471-0711-42ca-a53c-a6345005fc97|/documents/c469e471-0711-42ca-a53c-a6345005fc97/} audit_internal_action: Released analysis {ENCAN903TTU|/analyses/ENCAN903TTU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF827LSX|/files/ENCFF827LSX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.62. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF076TMZ|/files/ENCFF076TMZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.62. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR271XMW | float |
TF_ChIP-seq_ENCSR271XMW |
TF_ChIP-seq ENCSR271XMW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300" and target="EP300"]
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[15.5, 526] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF827LSX.bed.gz | 294.91 KB | d060f9ae33e4baf741c793eedbd0a8ce |
| ENCFF827LSX.bed.gz.dvc | 100.0 B | 992880da098c9e604d31fa257b71b22e |
| ENCFF827LSX.tabix.bed.gz | 222.63 KB | 54861acb79cfc4fd27cb4c373f03f154 |
| ENCFF827LSX.tabix.bed.gz.dvc | 106.0 B | 5541a5d6933220190318563ccfeabd3d |
| ENCFF827LSX.tabix.bed.gz.tbi | 109.49 KB | adeb22e2340db6b40e33863a0179a5db |
| ENCFF827LSX.tabix.bed.gz.tbi.dvc | 110.0 B | c2c79c52d0a65f5b73059386a9a1cc4b |
| genomic_resource.yaml | 2.95 KB | 6f322798377740efb23f656c5051e3e7 |
| genomic_resource_original.yaml | 2.79 KB | 73e80dc610af367f7a7ead5ca4884a62 |
| statistics/ |