TF_ChIP-seq_ENCSR271RRH
TF_ChIP-seq ENCSR271RRH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"]
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| Id: | TF_ChIP-seq/ENCSR271RRH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR271RRH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN801IZL|/analyses/ENCAN801IZL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF288KOA|/files/ENCFF288KOA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF288KOA|/files/ENCFF288KOA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR271RRH | float |
TF_ChIP-seq_ENCSR271RRH |
TF_ChIP-seq ENCSR271RRH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253" and target="ZNF253"]
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[16.2, 578] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF019NGO.bed.gz | 21.32 KB | 02eb6feb2038b9b55b2093011451a5cd |
| ENCFF019NGO.bed.gz.dvc | 99.0 B | 4430accfb25d90412bd8d23d543751a8 |
| ENCFF019NGO.tabix.bed.gz | 13.41 KB | 4f7f392d8229c2614c9fb21e7d660af2 |
| ENCFF019NGO.tabix.bed.gz.dvc | 105.0 B | 14b8c955fe0d26816072f51d42c60b9d |
| ENCFF019NGO.tabix.bed.gz.tbi | 13.37 KB | 8c4afb575e437af7e5ddfc4a17cd9f6d |
| ENCFF019NGO.tabix.bed.gz.tbi.dvc | 109.0 B | 73b7ed3afcd65ce4797e3130444fa826 |
| genomic_resource.yaml | 2.98 KB | effd7b8666ab8144b8352f96c9e67d74 |
| genomic_resource_original.yaml | 2.82 KB | 0ffc5bd8646db2ab99d754fdfb303043 |
| statistics/ |