TF_ChIP-seq_ENCSR267NVP
TF_ChIP-seq ENCSR267NVP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"]
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| Id: | TF_ChIP-seq/ENCSR267NVP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR267NVP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN115ZSQ|/analyses/ENCAN115ZSQ/} has in progress subobject document {f3cbf431-8b60-4313-8177-29fd63d48eb5|/documents/f3cbf431-8b60-4313-8177-29fd63d48eb5/} audit_internal_action: Released analysis {ENCAN115ZSQ|/analyses/ENCAN115ZSQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF183PWA|/files/ENCFF183PWA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 18145600 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ESRRA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF183PWA|/files/ENCFF183PWA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF183PWA|/files/ENCFF183PWA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF235PTY|/files/ENCFF235PTY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF235PTY|/files/ENCFF235PTY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR267NVP | float |
TF_ChIP-seq_ENCSR267NVP |
TF_ChIP-seq ENCSR267NVP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"]
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[6.6, 557] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF700DMQ.bed.gz | 344.17 KB | 4dc61d794ad4789580cebf243cebd22a |
| ENCFF700DMQ.bed.gz.dvc | 100.0 B | cecf3575390f62d5a0eacd2a4cfc915f |
| ENCFF700DMQ.tabix.bed.gz | 264.09 KB | d31672e82201160ca40e7f17bf19ba3b |
| ENCFF700DMQ.tabix.bed.gz.dvc | 106.0 B | e59b7a7412f0e2c3d0356d852eca5402 |
| ENCFF700DMQ.tabix.bed.gz.tbi | 112.32 KB | 845c221b1406836fc8b8758f5de0e2dd |
| ENCFF700DMQ.tabix.bed.gz.tbi.dvc | 110.0 B | ff39f36a8310af10350ec15b6aaae3a0 |
| genomic_resource.yaml | 4.93 KB | d565c218b992e79bf1a9fe659eb1e49e |
| genomic_resource_original.yaml | 4.76 KB | 46473ce2535691872cecb285df4cbc49 |
| statistics/ |