TF_ChIP-seq_ENCSR266XFE
TF_ChIP-seq ENCSR266XFE [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR266XFE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR266XFE [biosamplesummary="Homo sapiens spleen tissue male adult (54 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN363NFP|/analyses/ENCAN363NFP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF247KXK|/files/ENCFF247KXK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF247KXK|/files/ENCFF247KXK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR266XFE | float |
TF_ChIP-seq_ENCSR266XFE |
TF_ChIP-seq ENCSR266XFE [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="POLR2A"]
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[10.3, 381] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991SQZ.bed.gz | 135.29 KB | 0cc02a8533becd7f8cac8e9e931bb2b0 |
| ENCFF991SQZ.bed.gz.dvc | 100.0 B | 2b536e9f0701665c694b11d083d20bf9 |
| ENCFF991SQZ.tabix.bed.gz | 92.98 KB | f8a1b9c5b4a57acc3864c5b4ea4f4fdd |
| ENCFF991SQZ.tabix.bed.gz.dvc | 105.0 B | 8ab9d90353dace7bea5b99313c74cf1d |
| ENCFF991SQZ.tabix.bed.gz.tbi | 66.29 KB | e02eb1309b7c106c5ab9b7afd6c26695 |
| ENCFF991SQZ.tabix.bed.gz.tbi.dvc | 109.0 B | 3401a3222d7e5b62f0b7246fa5dca9ce |
| genomic_resource.yaml | 2.72 KB | fae563de7de6d49fd85605ce1f458dc4 |
| genomic_resource_original.yaml | 2.6 KB | 95e1d7b4306914ff3add8753f3b11e3a |
| statistics/ |