TF_ChIP-seq_ENCSR264SRY
TF_ChIP-seq ENCSR264SRY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512" and target="ZNF512"]
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| Id: | TF_ChIP-seq/ENCSR264SRY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR264SRY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512" and target="ZNF512"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN815QVH|/analyses/ENCAN815QVH/} has in progress subobject document {6a26332e-0100-460a-b655-c9b00f1afe4d|/documents/6a26332e-0100-460a-b655-c9b00f1afe4d/} audit_internal_action: Released analysis {ENCAN815QVH|/analyses/ENCAN815QVH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF331DRK|/files/ENCFF331DRK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF331DRK|/files/ENCFF331DRK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF231ELS|/files/ENCFF231ELS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF231ELS|/files/ENCFF231ELS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR264SRY | float |
TF_ChIP-seq_ENCSR264SRY |
TF_ChIP-seq ENCSR264SRY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512" and target="ZNF512"]
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[10.7, 279] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233OIC.bed.gz | 114.52 KB | 7eed5c3ad566aba77ababfed6bb619e3 |
| ENCFF233OIC.bed.gz.dvc | 100.0 B | 728b0ea896ccc9b9971933d55085f7c2 |
| ENCFF233OIC.tabix.bed.gz | 86.05 KB | 4c12e794c035170cbf22c694883398ec |
| ENCFF233OIC.tabix.bed.gz.dvc | 105.0 B | f0227e124385cf1432c6496b4fe8f56b |
| ENCFF233OIC.tabix.bed.gz.tbi | 47.98 KB | 4881919f5bebd36d66f238d82ff2800c |
| ENCFF233OIC.tabix.bed.gz.tbi.dvc | 109.0 B | ee511536dfb980b23c9da9a5975fe902 |
| genomic_resource.yaml | 4.45 KB | 9bc03a1ae0a047dbea74ec09cc7d74f9 |
| genomic_resource_original.yaml | 4.29 KB | e638984eb98ba5eaddb92d677bdcb3bd |
| statistics/ |