TF_ChIP-seq_ENCSR264LQX
TF_ChIP-seq ENCSR264LQX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383" and target="ZNF383"]
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| Id: | TF_ChIP-seq/ENCSR264LQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR264LQX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383" and target="ZNF383"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN490OXC|/analyses/ENCAN490OXC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN490OXC|/analyses/ENCAN490OXC/} has in progress subobject document {47026656-8258-4bcb-b889-59d87906824a|/documents/47026656-8258-4bcb-b889-59d87906824a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF127QYP|/files/ENCFF127QYP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF127QYP|/files/ENCFF127QYP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF638RJY|/files/ENCFF638RJY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF638RJY|/files/ENCFF638RJY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.14. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF442ZRY|/files/ENCFF442ZRY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 4.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF358SRK|/files/ENCFF358SRK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 4.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR264LQX | float |
TF_ChIP-seq_ENCSR264LQX |
TF_ChIP-seq ENCSR264LQX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383" and target="ZNF383"]
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[12.8, 212] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442ZRY.bed.gz | 110.95 KB | c41f80418087ace82afd7953ff1bbb62 |
| ENCFF442ZRY.bed.gz.dvc | 100.0 B | 05b61ebbd347e0117c5b4f4f6ee5ae04 |
| ENCFF442ZRY.tabix.bed.gz | 85.37 KB | 1acee05e1fbf1cd67341fd2464bf04b6 |
| ENCFF442ZRY.tabix.bed.gz.dvc | 105.0 B | 7b35c9163ffc9c494c719db10134f659 |
| ENCFF442ZRY.tabix.bed.gz.tbi | 42.74 KB | fe0bb68bdd16371ebbf9ae03c1a7d173 |
| ENCFF442ZRY.tabix.bed.gz.tbi.dvc | 109.0 B | 4ee7cd89d83ebba16f4b1a6fd0b0b9ce |
| genomic_resource.yaml | 5.49 KB | 99f1795052286a89ee6dc44e96a57fae |
| genomic_resource_original.yaml | 5.33 KB | f1f2cfe8e058f9730eafbf629ff9997c |
| statistics/ |