TF_ChIP-seq_ENCSR263XFO
TF_ChIP-seq ENCSR263XFO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83" and target="ZNF83"]
×
| Id: | TF_ChIP-seq/ENCSR263XFO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR263XFO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83" and target="ZNF83"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN057TDE|/analyses/ENCAN057TDE/} has replaced subobject file {ebb69bfd-9975-4100-85ed-de7438ec52d1|/files/ebb69bfd-9975-4100-85ed-de7438ec52d1/} audit_internal_action: Released analysis {ENCAN057TDE|/analyses/ENCAN057TDE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN057TDE|/analyses/ENCAN057TDE/} has replaced subobject file {58c8055e-9cf8-46f3-a364-df4e35af3876|/files/58c8055e-9cf8-46f3-a364-df4e35af3876/} audit_internal_action: Released analysis {ENCAN057TDE|/analyses/ENCAN057TDE/} has in progress subobject document {8dc84a00-58bd-4baa-b740-0b100ded062b|/documents/8dc84a00-58bd-4baa-b740-0b100ded062b/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF635BHH|/files/ENCFF635BHH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF635BHH|/files/ENCFF635BHH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF759LZP|/files/ENCFF759LZP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF759LZP|/files/ENCFF759LZP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.72. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF621IOC|/files/ENCFF621IOC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 3.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF450KKE|/files/ENCFF450KKE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 3.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR263XFO | float |
TF_ChIP-seq_ENCSR263XFO |
TF_ChIP-seq ENCSR263XFO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83" and target="ZNF83"]
|
|
[9.54, 459] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF621IOC.bed.gz | 124.55 KB | 5b059cf623d136b0947e77c206314f8a |
| ENCFF621IOC.bed.gz.dvc | 100.0 B | 2a9afffe89590d45610550c1f15c3003 |
| ENCFF621IOC.tabix.bed.gz | 91.72 KB | 079d8faea0f3cb6e06eaeccc3e4ba979 |
| ENCFF621IOC.tabix.bed.gz.dvc | 105.0 B | 6f6bb97da20d924e5184667cf5a51ec3 |
| ENCFF621IOC.tabix.bed.gz.tbi | 51.51 KB | b5186ebaf16a1391c7bc70976c76b767 |
| ENCFF621IOC.tabix.bed.gz.tbi.dvc | 109.0 B | cc30e9c815834e6006b66021d948a5a0 |
| genomic_resource.yaml | 5.89 KB | e2b8b0ecebc47832b7821022ce920c76 |
| genomic_resource_original.yaml | 5.72 KB | 76d9c385423c78e6831249777745915d |
| statistics/ |