TF_ChIP-seq_ENCSR261UIH
TF_ChIP-seq ENCSR261UIH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460" and target="ZNF460"]
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| Id: | TF_ChIP-seq/ENCSR261UIH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR261UIH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460" and target="ZNF460"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN411UQI|/analyses/ENCAN411UQI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN411UQI|/analyses/ENCAN411UQI/} has in progress subobject document {77d3b87e-6c11-4f75-88ad-e1fac0c24b77|/documents/77d3b87e-6c11-4f75-88ad-e1fac0c24b77/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF189CJK|/files/ENCFF189CJK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF189CJK|/files/ENCFF189CJK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF005JGH|/files/ENCFF005JGH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF005JGH|/files/ENCFF005JGH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.00. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF261NJZ|/files/ENCFF261NJZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 4.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF007NNM|/files/ENCFF007NNM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 4.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR261UIH | float |
TF_ChIP-seq_ENCSR261UIH |
TF_ChIP-seq ENCSR261UIH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460" and target="ZNF460"]
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[9.45, 612] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF261NJZ.bed.gz | 293.43 KB | 7cfeb2f216091c16ad990dd788dcf0c4 |
| ENCFF261NJZ.bed.gz.dvc | 100.0 B | a29c32ac1a8ee1f95105b2bbec98f846 |
| ENCFF261NJZ.tabix.bed.gz | 214.01 KB | 114be4a5601166ac7e9c696faad3b13e |
| ENCFF261NJZ.tabix.bed.gz.dvc | 106.0 B | 47292c6ce316cf2f8d5fa203d6ef5d84 |
| ENCFF261NJZ.tabix.bed.gz.tbi | 96.52 KB | 7544e437d26d6eb78f1fbfb9cd29b496 |
| ENCFF261NJZ.tabix.bed.gz.tbi.dvc | 109.0 B | 131299a220416286f7361c63756a9838 |
| genomic_resource.yaml | 5.49 KB | f136dad5810bd6c93fad212e78920829 |
| genomic_resource_original.yaml | 5.33 KB | 53bd1f614033f2f0a355f7b3c7ac07b2 |
| statistics/ |