TF_ChIP-seq_ENCSR261EBV
TF_ChIP-seq ENCSR261EBV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"]
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| Id: | TF_ChIP-seq/ENCSR261EBV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR261EBV [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AFF4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN896HLY|/analyses/ENCAN896HLY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF590VFH|/files/ENCFF590VFH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF590VFH|/files/ENCFF590VFH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044OIH|/files/ENCFF044OIH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044OIH|/files/ENCFF044OIH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF835WQS|/files/ENCFF835WQS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR261EBV | float |
TF_ChIP-seq_ENCSR261EBV |
TF_ChIP-seq ENCSR261EBV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"]
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[7.8, 251] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF835WQS.bed.gz | 73.14 KB | 67e5d0eda69284152255a646b3870ccc |
| ENCFF835WQS.bed.gz.dvc | 99.0 B | 647ac81eb036d214c9f7a6a0c32c1d4b |
| ENCFF835WQS.tabix.bed.gz | 54.41 KB | 7a9bc5bd7f2adeeef8f1aca2de323484 |
| ENCFF835WQS.tabix.bed.gz.dvc | 105.0 B | 812399e7291406b1b2b88a934158ae36 |
| ENCFF835WQS.tabix.bed.gz.tbi | 35.8 KB | 4bc4091567c09b8ffdecbf06ff1cc255 |
| ENCFF835WQS.tabix.bed.gz.tbi.dvc | 109.0 B | 8d3a1c279a129d8149c055347b837f0f |
| genomic_resource.yaml | 4.74 KB | 8198ec30d6061c70a14867822d91340d |
| genomic_resource_original.yaml | 4.58 KB | 863199a73c2e805a5b7c699c4bb00045 |
| statistics/ |