TF_ChIP-seq_ENCSR260GQA
TF_ChIP-seq ENCSR260GQA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671" and target="ZNF671"]
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| Id: | TF_ChIP-seq/ENCSR260GQA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR260GQA [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671" and target="ZNF671"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN113ZRY|/analyses/ENCAN113ZRY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF778JNF|/files/ENCFF778JNF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF778JNF|/files/ENCFF778JNF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.21. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF688BJA|/files/ENCFF688BJA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF688BJA|/files/ENCFF688BJA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR260GQA | float |
TF_ChIP-seq_ENCSR260GQA |
TF_ChIP-seq ENCSR260GQA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671" and target="ZNF671"]
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[14.2, 1.73e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF300TKM.bed.gz | 52.66 KB | 5bf5c54b985c8f1233bbae985b6cc2f7 |
| ENCFF300TKM.bed.gz.dvc | 99.0 B | eaf3909c160b3206c18fc85987682291 |
| ENCFF300TKM.tabix.bed.gz | 33.35 KB | 04c72f062ebd0dfe2777c92ef9e84a72 |
| ENCFF300TKM.tabix.bed.gz.dvc | 105.0 B | 3b4100a4c829afdd4accfc292bbdfb96 |
| ENCFF300TKM.tabix.bed.gz.tbi | 22.86 KB | 7fc665132878231938bf3e35a345c496 |
| ENCFF300TKM.tabix.bed.gz.tbi.dvc | 109.0 B | cdae89387bcd451645a43484ef38c3a8 |
| genomic_resource.yaml | 4.24 KB | 250cd4a5ec4fb39acdc536480de3558e |
| genomic_resource_original.yaml | 4.07 KB | d75a2b0b3a98c31063f1754adfb57aaa |
| statistics/ |