TF_ChIP-seq_ENCSR257XVY
TF_ChIP-seq ENCSR257XVY [biosample_summary="Homo sapiens K562 stably expressing ZNF83" and target="ZNF83"]
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| Id: | TF_ChIP-seq/ENCSR257XVY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR257XVY [biosamplesummary="Homo sapiens K562 stably expressing ZNF83" and target="ZNF83"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged ZNF83 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN227TGL|/analyses/ENCAN227TGL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF306XER|/files/ENCFF306XER/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18070415 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF83-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF654BMD|/files/ENCFF654BMD/}, {ENCFF755MMS|/files/ENCFF755MMS/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF180MZG|/files/ENCFF180MZG/}, {ENCFF143SUE|/files/ENCFF143SUE/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR257XVY | float |
TF_ChIP-seq_ENCSR257XVY |
TF_ChIP-seq ENCSR257XVY [biosample_summary="Homo sapiens K562 stably expressing ZNF83" and target="ZNF83"]
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[29.2, 563] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF654BMD.bed.gz | 170.13 KB | 23427149d84edb0eff7ef3d6750b8089 |
| ENCFF654BMD.bed.gz.dvc | 100.0 B | b35498b21266e0a4e241f0712ef9ccd0 |
| ENCFF654BMD.tabix.bed.gz | 156.85 KB | bd561c1645641c42fb36c33ae953939f |
| ENCFF654BMD.tabix.bed.gz.dvc | 106.0 B | 9b7100ac2c10f6523b0d4660c8576f09 |
| ENCFF654BMD.tabix.bed.gz.tbi | 71.78 KB | 5aff933f2d74fd3c159b6bfbdedcc726 |
| ENCFF654BMD.tabix.bed.gz.tbi.dvc | 109.0 B | ed47c3b07d3299752e013c72476f7a4b |
| genomic_resource.yaml | 3.06 KB | ecbdc0fb195517b9a23848e768371b9c |
| genomic_resource_original.yaml | 2.95 KB | 4c0f88755995f3f6455efb3ab2663be4 |
| statistics/ |