TF_ChIP-seq_ENCSR257RKC
TF_ChIP-seq ENCSR257RKC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"]
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| Id: | TF_ChIP-seq/ENCSR257RKC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR257RKC [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN921HCE|/analyses/ENCAN921HCE/} has in progress subobject document {ca603277-1c01-4da3-94da-e77264748fd7|/documents/ca603277-1c01-4da3-94da-e77264748fd7/} audit_internal_action: Released analysis {ENCAN921HCE|/analyses/ENCAN921HCE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF307XGY|/files/ENCFF307XGY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF307XGY|/files/ENCFF307XGY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF032UMK|/files/ENCFF032UMK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF032UMK|/files/ENCFF032UMK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR257RKC | float |
TF_ChIP-seq_ENCSR257RKC |
TF_ChIP-seq ENCSR257RKC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"]
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[11.5, 643] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF772OKO.bed.gz | 273.02 KB | 071b143452bced3d8ce707ada2b7d562 |
| ENCFF772OKO.bed.gz.dvc | 100.0 B | 024188d8b705bbe635694296f1c87583 |
| ENCFF772OKO.tabix.bed.gz | 199.6 KB | c03f905e77c976163e00af75496bda84 |
| ENCFF772OKO.tabix.bed.gz.dvc | 106.0 B | e3c4cc08162106d57ae546ea49b6e719 |
| ENCFF772OKO.tabix.bed.gz.tbi | 107.13 KB | b8e22e33e2d0adda674391199c1c7c40 |
| ENCFF772OKO.tabix.bed.gz.tbi.dvc | 110.0 B | ba35483082453ebf9dea499689facab2 |
| genomic_resource.yaml | 4.44 KB | 7348cc6fbd3108256c142ed6a442f553 |
| genomic_resource_original.yaml | 4.28 KB | c8a4a0d7941e4d534128ccefb56cf6c2 |
| statistics/ |