TF_ChIP-seq_ENCSR253OON
TF_ChIP-seq ENCSR253OON [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1" and target="ATF1"]
×
| Id: | TF_ChIP-seq/ENCSR253OON |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR253OON [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1" and target="ATF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN090IRG|/analyses/ENCAN090IRG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF296PIX|/files/ENCFF296PIX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR253OON | float |
TF_ChIP-seq_ENCSR253OON |
TF_ChIP-seq ENCSR253OON [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1" and target="ATF1"]
|
|
[10.4, 910] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF418WDR.bed.gz | 248.77 KB | 66a153f2060d613665c656ed0f47f943 |
| ENCFF418WDR.bed.gz.dvc | 100.0 B | dc8da52ec43e461ebf6067cd1fb33843 |
| ENCFF418WDR.tabix.bed.gz | 196.29 KB | 0414631e813adc7526923c1affc5b655 |
| ENCFF418WDR.tabix.bed.gz.dvc | 106.0 B | 007ca4fa7b14d0d066d26b037b395995 |
| ENCFF418WDR.tabix.bed.gz.tbi | 88.51 KB | bf0ec381f54f50de022f4fe325a00ef1 |
| ENCFF418WDR.tabix.bed.gz.tbi.dvc | 109.0 B | f81a6fa08065ff5c8c9f37a366a7cfa1 |
| genomic_resource.yaml | 2.33 KB | 17c10ec30c49e7b0b701bc57f650ed50 |
| genomic_resource_original.yaml | 2.17 KB | ab48e35f3e92a171d852e300f828b170 |
| statistics/ |