TF_ChIP-seq_ENCSR253HUM
TF_ChIP-seq ENCSR253HUM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576" and target="ZNF576"]
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| Id: | TF_ChIP-seq/ENCSR253HUM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR253HUM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576" and target="ZNF576"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN107MKE|/analyses/ENCAN107MKE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN107MKE|/analyses/ENCAN107MKE/} has in progress subobject document {3e9dc359-a979-430d-83c0-65e023232ae9|/documents/3e9dc359-a979-430d-83c0-65e023232ae9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF796EVB|/files/ENCFF796EVB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF796EVB|/files/ENCFF796EVB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF923KBV|/files/ENCFF923KBV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF923KBV|/files/ENCFF923KBV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR253HUM | float |
TF_ChIP-seq_ENCSR253HUM |
TF_ChIP-seq ENCSR253HUM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576" and target="ZNF576"]
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[11.3, 488] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF115ENN.bed.gz | 103.89 KB | fd3ea763f75abe87f2ddd99fd581b375 |
| ENCFF115ENN.bed.gz.dvc | 100.0 B | 5bd993ddb6188e6846a2732e3d58df7e |
| ENCFF115ENN.tabix.bed.gz | 73.4 KB | ca27e6c3d3b2970fc4731e7c12335f22 |
| ENCFF115ENN.tabix.bed.gz.dvc | 105.0 B | 67f304064124a0191b1d312d618a3b24 |
| ENCFF115ENN.tabix.bed.gz.tbi | 44.88 KB | 4ba8a58b7ee580474262fa1187ae5758 |
| ENCFF115ENN.tabix.bed.gz.tbi.dvc | 109.0 B | 562decdeb48c0e5df22c4a8d2f2238bf |
| genomic_resource.yaml | 4.45 KB | d67975184ae51d24ff2071235069627d |
| genomic_resource_original.yaml | 4.29 KB | 639c8b78356545a9291f76b0d581253e |
| statistics/ |