type: position_score
table:
  filename: ENCFF846FYU.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR252QYR
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR252QYR [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR252QYR [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="CTCF"]'
  description: '**status**: archived


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female embryo (5 days)


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN416HDV|/analyses/ENCAN416HDV/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_not\_compliant**: NRF (Non Redundant Fraction) is equal to the result
    of the division of the number of reads after duplicates removal by the total number
    of reads. An NRF value in the range 0 - 0.5 is poor complexity, 0.5 - 0.8 is moderate
    complexity, and > 0.8 high complexity. NRF value > 0.8 is recommended, but > 0.5
    is acceptable. ENCODE processed alignments file {ENCFF546BUY|/files/ENCFF546BUY/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with
    NRF value of 0.49.


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF546BUY|/files/ENCFF546BUY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline
    was generated from a library with PBC1 value of 0.74.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR252QYR
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (5 days)
    biosample_summary: Homo sapiens hepatocyte originated from H9
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000182/
    perturbed: false
    doi: 10.17989/ENCSR252QYR
    date_created: '2016-04-11T19:01:45.142571+00:00'
    date_released: '2016-11-23'
    submitter_comment: ''
    target: CTCF
