TF_ChIP-seq_ENCSR251XFX
TF_ChIP-seq ENCSR251XFX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1" and target="DMTF1"]
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| Id: | TF_ChIP-seq/ENCSR251XFX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR251XFX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1" and target="DMTF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN816UBX|/analyses/ENCAN816UBX/} has in progress subobject document {b8400c3d-9a8b-4d71-afd3-f0e59086ebcc|/documents/b8400c3d-9a8b-4d71-afd3-f0e59086ebcc/} audit_internal_action: Released analysis {ENCAN816UBX|/analyses/ENCAN816UBX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF206DCN|/files/ENCFF206DCN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF206DCN|/files/ENCFF206DCN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.28. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF737QNC|/files/ENCFF737QNC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF737QNC|/files/ENCFF737QNC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR251XFX | float |
TF_ChIP-seq_ENCSR251XFX |
TF_ChIP-seq ENCSR251XFX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1" and target="DMTF1"]
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[9.18, 433] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF598CBU.bed.gz | 71.7 KB | 6e105b8c699a9e149a881b0acfa2da79 |
| ENCFF598CBU.bed.gz.dvc | 99.0 B | 99ac125c43608e8e391c13ca2ecade6b |
| ENCFF598CBU.tabix.bed.gz | 53.37 KB | 426931a1310007fb09e37b095d2e072c |
| ENCFF598CBU.tabix.bed.gz.dvc | 105.0 B | 9836189f8b0e6e268527fa464aa7d07c |
| ENCFF598CBU.tabix.bed.gz.tbi | 32.19 KB | 19a55ed0dd1fecd81284d04bef545a65 |
| ENCFF598CBU.tabix.bed.gz.tbi.dvc | 109.0 B | 530d5a4dbdd1d6e8e2fd8a2f31e2695d |
| genomic_resource.yaml | 4.44 KB | c760a2bcdde140ff795e1b7744076909 |
| genomic_resource_original.yaml | 4.28 KB | b3a8fc57c668cd1250f0d99953b34639 |
| statistics/ |