| Id: | TF_ChIP-seq/ENCSR250LJG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR250LJG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD2B" and target="GATAD2B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GATAD2B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN690LSR|/analyses/ENCAN690LSR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF083WGV|/files/ENCFF083WGV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF083WGV|/files/ENCFF083WGV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF424XHT|/files/ENCFF424XHT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF424XHT|/files/ENCFF424XHT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.55. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR250LJG | float |
TF_ChIP-seq_ENCSR250LJG |
TF_ChIP-seq ENCSR250LJG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD2B" and target="GATAD2B"]
|
 |
[11.2, 249] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF659FLZ.bed.gz | 344.09 KB | 6b73527e45dac820b145c084f0c24c4e |
| ENCFF659FLZ.bed.gz.dvc | 100.0 B | 0ce504b2a7617029c93ccfe8104ae756 |
| ENCFF659FLZ.tabix.bed.gz | 263.33 KB | 431c0a8552c62f5638ed4fc60adb4fd0 |
| ENCFF659FLZ.tabix.bed.gz.dvc | 106.0 B | 91fadea53929ae4d1e1d7a8c5b03a0db |
| ENCFF659FLZ.tabix.bed.gz.tbi | 105.03 KB | 95e32a913dd898c8204623460b651a0f |
| ENCFF659FLZ.tabix.bed.gz.tbi.dvc | 110.0 B | 1501d618c24381ff4f78b3a5869b8235 |
| genomic_resource.yaml | 4.25 KB | 1aa2ddb14eb97b683dbd8a48c4741891 |
| genomic_resource_original.yaml | 4.08 KB | be645ded20b63a0a0b3f8c515af5f776 |
| statistics/ |