TF_ChIP-seq_ENCSR249VFB
TF_ChIP-seq ENCSR249VFB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49" and target="ZBTB49"]
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| Id: | TF_ChIP-seq/ENCSR249VFB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR249VFB [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49" and target="ZBTB49"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN438QWY|/analyses/ENCAN438QWY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF902MKD|/files/ENCFF902MKD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF902MKD|/files/ENCFF902MKD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF752YPM|/files/ENCFF752YPM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF752YPM|/files/ENCFF752YPM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.67. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF308VAI|/files/ENCFF308VAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.51. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR249VFB | float |
TF_ChIP-seq_ENCSR249VFB |
TF_ChIP-seq ENCSR249VFB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49" and target="ZBTB49"]
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[9.45, 297] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF308VAI.bed.gz | 52.72 KB | df001b91033c97d18376994e157e9b32 |
| ENCFF308VAI.bed.gz.dvc | 99.0 B | 1e6b864e8f30435b190ddea4bd31836a |
| ENCFF308VAI.tabix.bed.gz | 36.61 KB | d8a468d22f857614ae666e96522be4a5 |
| ENCFF308VAI.tabix.bed.gz.dvc | 105.0 B | 2177921c079cb75ee851267502ae207c |
| ENCFF308VAI.tabix.bed.gz.tbi | 26.38 KB | 985f1c4123d99eee4b6ae7cc5ef18c72 |
| ENCFF308VAI.tabix.bed.gz.tbi.dvc | 109.0 B | 0721a30098dfd569bd98a6a86320963c |
| genomic_resource.yaml | 4.76 KB | 2cda93fbe4a3b37dcdffd07fa97bbcac |
| genomic_resource_original.yaml | 4.59 KB | acb1be1f8871d456ebd821981ec54d48 |
| statistics/ |