TF_ChIP-seq_ENCSR249BHQ
TF_ChIP-seq ENCSR249BHQ [biosample_summary="Homo sapiens K562" and target="ZNF592"]
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| Id: | TF_ChIP-seq/ENCSR249BHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR249BHQ [biosamplesummary="Homo sapiens K562" and target="ZNF592"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF972UGK|/files/ENCFF972UGK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN724QTU|/analyses/ENCAN724QTU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF437IVZ|/files/ENCFF437IVZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF437IVZ|/files/ENCFF437IVZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.67. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF119ZDI|/files/ENCFF119ZDI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF119ZDI|/files/ENCFF119ZDI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR249BHQ | float |
TF_ChIP-seq_ENCSR249BHQ |
TF_ChIP-seq ENCSR249BHQ [biosample_summary="Homo sapiens K562" and target="ZNF592"]
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[14, 1.07e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF972UGK.bed.gz | 661.18 KB | 719a9d4a46c1991103ec3136bde2c0ef |
| ENCFF972UGK.bed.gz.dvc | 100.0 B | 7b178f4966aba397e6fcc4b23b005ce9 |
| ENCFF972UGK.tabix.bed.gz | 470.18 KB | 7b0bed64af7e30b678b7839b496b764c |
| ENCFF972UGK.tabix.bed.gz.dvc | 106.0 B | 90f98c6697de2c7b24575991b435b25f |
| ENCFF972UGK.tabix.bed.gz.tbi | 141.83 KB | e549cb0bf18bf98bd2a1521f853b56ba |
| ENCFF972UGK.tabix.bed.gz.tbi.dvc | 110.0 B | f9661db1b9c31e5935d3ae75089e5946 |
| genomic_resource.yaml | 4.13 KB | acc63c1931dd390790efd4aa5c848541 |
| genomic_resource_original.yaml | 4.03 KB | 2998f3881e78418f205a0da8b1e109b8 |
| statistics/ |