TF_ChIP-seq_ENCSR248WAU
TF_ChIP-seq ENCSR248WAU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772" and target="ZNF772"]
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| Id: | TF_ChIP-seq/ENCSR248WAU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR248WAU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772" and target="ZNF772"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN681TFA|/analyses/ENCAN681TFA/} has in progress subobject document {1233d53b-0f39-4d95-b583-e6824c58c018|/documents/1233d53b-0f39-4d95-b583-e6824c58c018/} audit_internal_action: Released analysis {ENCAN681TFA|/analyses/ENCAN681TFA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF384ONI|/files/ENCFF384ONI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF384ONI|/files/ENCFF384ONI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF446KTM|/files/ENCFF446KTM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF446KTM|/files/ENCFF446KTM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR248WAU | float |
TF_ChIP-seq_ENCSR248WAU |
TF_ChIP-seq ENCSR248WAU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772" and target="ZNF772"]
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[10.9, 489] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF874HXM.bed.gz | 388.99 KB | 853064b43af6f53c07ff4fae1179b73a |
| ENCFF874HXM.bed.gz.dvc | 100.0 B | c284c7f8ef970f13e936c2cb57f7bd60 |
| ENCFF874HXM.tabix.bed.gz | 312.97 KB | eea3d53aa38fb712cd5937e3c252b62a |
| ENCFF874HXM.tabix.bed.gz.dvc | 106.0 B | 8a49435a7b196b3a50b999e43ecdccee |
| ENCFF874HXM.tabix.bed.gz.tbi | 117.84 KB | 3c533cc4a428a2868a7ac163a7a99dd1 |
| ENCFF874HXM.tabix.bed.gz.tbi.dvc | 110.0 B | 62322685b3ac2f69c5b4d573607d465a |
| genomic_resource.yaml | 4.45 KB | 6fd22a76a073fb18029df47304db45c2 |
| genomic_resource_original.yaml | 4.29 KB | ea298de070e119cba879e510e45bcd13 |
| statistics/ |