TF_ChIP-seq_ENCSR248QBT
TF_ChIP-seq ENCSR248QBT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"]
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| Id: | TF_ChIP-seq/ENCSR248QBT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR248QBT [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens USF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN141EBE|/analyses/ENCAN141EBE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF920EHE|/files/ENCFF920EHE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF920EHE|/files/ENCFF920EHE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR248QBT | float |
TF_ChIP-seq_ENCSR248QBT |
TF_ChIP-seq ENCSR248QBT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"]
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[8.83, 843] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF254GEZ.bed.gz | 283.09 KB | 1ca32e281605816b090652ac357146bd |
| ENCFF254GEZ.bed.gz.dvc | 100.0 B | bf81115226fbc24a6c18850ab29dd4ee |
| ENCFF254GEZ.tabix.bed.gz | 211.74 KB | 002a64dff47f5e32b8e1a0efbf6d7d33 |
| ENCFF254GEZ.tabix.bed.gz.dvc | 106.0 B | 7271d627a930a5cbaae882cc0cca25b0 |
| ENCFF254GEZ.tabix.bed.gz.tbi | 113.47 KB | af85641f0099bebaf49090c25c4a5603 |
| ENCFF254GEZ.tabix.bed.gz.tbi.dvc | 110.0 B | 03452514cbc0525c2b42dda7989abd65 |
| genomic_resource.yaml | 2.96 KB | f1c58a85b3f091c2dcd60f8477c50ed2 |
| genomic_resource_original.yaml | 2.79 KB | 10a95ae2959cd0cc3ba15dd23ddad7ca |
| statistics/ |