TF_ChIP-seq_ENCSR248IMH
TF_ChIP-seq ENCSR248IMH [biosample_summary="Homo sapiens MCF-7" and target="NFRKB"]
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| Id: | TF_ChIP-seq/ENCSR248IMH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR248IMH [biosamplesummary="Homo sapiens MCF-7" and target="NFRKB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN098XEO|/analyses/ENCAN098XEO/} has in progress subobject document {fa788249-b5de-4f3c-8bbf-2084c4f12984|/documents/fa788249-b5de-4f3c-8bbf-2084c4f12984/} audit_internal_action: Released analysis {ENCAN098XEO|/analyses/ENCAN098XEO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955DLC|/files/ENCFF955DLC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955DLC|/files/ENCFF955DLC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR248IMH | float |
TF_ChIP-seq_ENCSR248IMH |
TF_ChIP-seq ENCSR248IMH [biosample_summary="Homo sapiens MCF-7" and target="NFRKB"]
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[16.3, 271] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532IPJ.bed.gz | 15.4 KB | 5fab2deb3fa542aca2a5131b6bf1c6e2 |
| ENCFF532IPJ.bed.gz.dvc | 99.0 B | 3051b95e34abd54ddc09eaa3180073ce |
| ENCFF532IPJ.tabix.bed.gz | 9.86 KB | 13871940930be8090c10419464aba429 |
| ENCFF532IPJ.tabix.bed.gz.dvc | 105.0 B | 313977a248dd5140ed0bebbf644115c2 |
| ENCFF532IPJ.tabix.bed.gz.tbi | 6.88 KB | 33ec85b750be2eeacc27119d22d343b7 |
| ENCFF532IPJ.tabix.bed.gz.tbi.dvc | 108.0 B | 4c66ddfdfbe1028953ac5ce98debe566 |
| genomic_resource.yaml | 2.87 KB | ce7ac8fec7c1a8b56e67d3fa1e163dd5 |
| genomic_resource_original.yaml | 2.78 KB | 1efa64eae3755371a9852e345172e48f |
| statistics/ |