TF_ChIP-seq_ENCSR243OKN
TF_ChIP-seq ENCSR243OKN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED8" and target="MED8"]
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| Id: | TF_ChIP-seq/ENCSR243OKN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR243OKN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED8" and target="MED8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MED8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN705HUC|/analyses/ENCAN705HUC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF990ZAB|/files/ENCFF990ZAB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 2.96 and a self consistency ratio of 12.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF739KON|/files/ENCFF739KON/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF739KON|/files/ENCFF739KON/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.48. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF759VFM|/files/ENCFF759VFM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF759VFM|/files/ENCFF759VFM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR243OKN | float |
TF_ChIP-seq_ENCSR243OKN |
TF_ChIP-seq ENCSR243OKN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED8" and target="MED8"]
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[11.6, 376] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF990ZAB.bed.gz | 226.83 KB | 3b132720095125114f3a0998420d42d7 |
| ENCFF990ZAB.bed.gz.dvc | 100.0 B | 81e955ad085d84441cdec91cfa65bb0d |
| ENCFF990ZAB.tabix.bed.gz | 173.48 KB | d8f4601c07c8f49e5f3d2187a3f7839b |
| ENCFF990ZAB.tabix.bed.gz.dvc | 106.0 B | 28daccae1a88b9669d052e87b94dc1e3 |
| ENCFF990ZAB.tabix.bed.gz.tbi | 77.41 KB | d168ae11ef95e1a8ca9f217543c69994 |
| ENCFF990ZAB.tabix.bed.gz.tbi.dvc | 109.0 B | be4a2ff3a7b05804245fc1c91e845392 |
| genomic_resource.yaml | 4.97 KB | f011742346b5987d390ff0a5159be48a |
| genomic_resource_original.yaml | 4.81 KB | 085d89d56fa0aa0a4975f3dd5b63063b |
| statistics/ |