| Id: | TF_ChIP-seq/ENCSR242BGR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR242BGR [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770" and target="ZNF770"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN477BZZ|/analyses/ENCAN477BZZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF554RDX|/files/ENCFF554RDX/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF433KBE|/files/ENCFF433KBE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18333508 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF770-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF718QAG|/files/ENCFF718QAG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF718QAG|/files/ENCFF718QAG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR242BGR | float |
TF_ChIP-seq_ENCSR242BGR |
TF_ChIP-seq ENCSR242BGR [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770" and target="ZNF770"]
|
 |
[15.9, 4.54e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF554RDX.bed.gz | 1020.13 KB | 7553d7254e2d58dfe807df5479d9eb4b |
| ENCFF554RDX.bed.gz.dvc | 101.0 B | 1ead594570dc2846c8f8f4ec0400da7c |
| ENCFF554RDX.tabix.bed.gz | 700.99 KB | 7aeb2bfe51c617617a42a25ab84e780c |
| ENCFF554RDX.tabix.bed.gz.dvc | 106.0 B | e2305450ae72a329e8934903ecfa376e |
| ENCFF554RDX.tabix.bed.gz.tbi | 253.41 KB | d208d3a4f1acc8e8f2cb179f903c4337 |
| ENCFF554RDX.tabix.bed.gz.tbi.dvc | 110.0 B | a5466ee7cfd28b0ca27b96a83f4ea813 |
| genomic_resource.yaml | 3.73 KB | da8a61137f6b3e827246383089a2fae6 |
| genomic_resource_original.yaml | 3.55 KB | 000b884dcb1d681196778673a290eedf |
| statistics/ |