TF_ChIP-seq_ENCSR241LIH
TF_ChIP-seq ENCSR241LIH [biosample_summary="Homo sapiens K562" and target="AFF1"]
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| Id: | TF_ChIP-seq/ENCSR241LIH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR241LIH [biosamplesummary="Homo sapiens K562" and target="AFF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN242AQU|/analyses/ENCAN242AQU/} has in progress subobject document {3223cf4d-626e-4410-a546-b417480dda3e|/documents/3223cf4d-626e-4410-a546-b417480dda3e/} audit_internal_action: Released analysis {ENCAN242AQU|/analyses/ENCAN242AQU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF882XHJ|/files/ENCFF882XHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17348733 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting AFF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF598MHO|/files/ENCFF598MHO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF598MHO|/files/ENCFF598MHO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF882XHJ|/files/ENCFF882XHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF882XHJ|/files/ENCFF882XHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.69. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR241LIH | float |
TF_ChIP-seq_ENCSR241LIH |
TF_ChIP-seq ENCSR241LIH [biosample_summary="Homo sapiens K562" and target="AFF1"]
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[10.1, 2.99e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF674XTY.bed.gz | 170.4 KB | 8b9f7fa9112e411a1d15c949b020eb6e |
| ENCFF674XTY.bed.gz.dvc | 100.0 B | dd494ce651d214ccbf7cf30bed95788f |
| ENCFF674XTY.tabix.bed.gz | 119.67 KB | c21b650d92f7ba25821f248ae2d6d38f |
| ENCFF674XTY.tabix.bed.gz.dvc | 106.0 B | fa5b3afa65ca6c4bceab496a5831cf83 |
| ENCFF674XTY.tabix.bed.gz.tbi | 61.34 KB | 332cf686d1699244197efd2142b592c2 |
| ENCFF674XTY.tabix.bed.gz.tbi.dvc | 109.0 B | 55f658108ba128a293561173272a6037 |
| genomic_resource.yaml | 5.23 KB | 821850221846c3d9e9b1461a734baf94 |
| genomic_resource_original.yaml | 5.13 KB | 0e367e5705ef8b2269b350a291ea52fa |
| statistics/ |