| Id: | TF_ChIP-seq/ENCSR238XDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR238XDV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BORCS8" and target="BORCS8-MEF2B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens BORCS8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN387HMZ|/analyses/ENCAN387HMZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF660TSA|/files/ENCFF660TSA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF660TSA|/files/ENCFF660TSA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.97. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF306SNV|/files/ENCFF306SNV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF306SNV|/files/ENCFF306SNV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.02. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR238XDV | float |
TF_ChIP-seq_ENCSR238XDV |
TF_ChIP-seq ENCSR238XDV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BORCS8" and target="BORCS8-MEF2B"]
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[12.1, 569] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF610WQK.bed.gz | 394.78 KB | fee47d5d79a0d8e878822702762af140 |
| ENCFF610WQK.bed.gz.dvc | 100.0 B | 329563c771d6b55885ed6ffdfe3e3690 |
| ENCFF610WQK.tabix.bed.gz | 301.15 KB | 0d0449252d8202ed37dde6effa4f8e64 |
| ENCFF610WQK.tabix.bed.gz.dvc | 106.0 B | f6f9a4f4ecf411eb2a3bde21cc14a3e5 |
| ENCFF610WQK.tabix.bed.gz.tbi | 120.03 KB | 003fe9759c36753567d81c39fbd9bfc9 |
| ENCFF610WQK.tabix.bed.gz.tbi.dvc | 110.0 B | 6d3221a25947274b1f06f4adae1fdaff |
| genomic_resource.yaml | 4.26 KB | f727026d1e479332f7de0e52e4fcd220 |
| genomic_resource_original.yaml | 4.08 KB | e40065e6782702f1fc823dbbe64fe163 |
| statistics/ |