TF_ChIP-seq_ENCSR237OGW
TF_ChIP-seq ENCSR237OGW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREBL2" and target="CREBL2"]
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| Id: | TF_ChIP-seq/ENCSR237OGW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR237OGW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREBL2" and target="CREBL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CREBL2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN151MIG|/analyses/ENCAN151MIG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF178QIK|/files/ENCFF178QIK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF178QIK|/files/ENCFF178QIK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.30. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF857BXY|/files/ENCFF857BXY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.73 and a self consistency ratio of 7.61. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR237OGW | float |
TF_ChIP-seq_ENCSR237OGW |
TF_ChIP-seq ENCSR237OGW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREBL2" and target="CREBL2"]
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[9.68, 406] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF857BXY.bed.gz | 115.28 KB | a4ff11a3a2764050fc6ad834848125fe |
| ENCFF857BXY.bed.gz.dvc | 100.0 B | 9f678cc80e61b6cadb3e7bc90fa96296 |
| ENCFF857BXY.tabix.bed.gz | 84.2 KB | f8b6ec231e4f7eb7d7c251f20dcf1e22 |
| ENCFF857BXY.tabix.bed.gz.dvc | 105.0 B | 5ac8b92f7c03c406b125ff3b9f2c10c1 |
| ENCFF857BXY.tabix.bed.gz.tbi | 47.18 KB | 27e7c6f5f689a0ea154902e7c09d865f |
| ENCFF857BXY.tabix.bed.gz.tbi.dvc | 109.0 B | be16c63bbb91c71e568f147b4b53602a |
| genomic_resource.yaml | 3.49 KB | 6c64bc5abfffebecdc1838c62775db0f |
| genomic_resource_original.yaml | 3.33 KB | b203d848017560bb51cd131a6e3a6319 |
| statistics/ |