TF_ChIP-seq_ENCSR235PYI
TF_ChIP-seq ENCSR235PYI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41" and target="ZNF41"]
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| Id: | TF_ChIP-seq/ENCSR235PYI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR235PYI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41" and target="ZNF41"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN582KOY|/analyses/ENCAN582KOY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN582KOY|/analyses/ENCAN582KOY/} has in progress subobject document {b408f049-dbb2-4067-975a-b8092bb18107|/documents/b408f049-dbb2-4067-975a-b8092bb18107/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF443BMH|/files/ENCFF443BMH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF443BMH|/files/ENCFF443BMH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.17. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF488HIV|/files/ENCFF488HIV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF488HIV|/files/ENCFF488HIV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR235PYI | float |
TF_ChIP-seq_ENCSR235PYI |
TF_ChIP-seq ENCSR235PYI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41" and target="ZNF41"]
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[14.4, 2.76e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF629EAD.bed.gz | 90.83 KB | dd9c5d589c4bb29fd1895b7f1800949b |
| ENCFF629EAD.bed.gz.dvc | 99.0 B | a8b752f1a5988b34529f2feb8aac9140 |
| ENCFF629EAD.tabix.bed.gz | 58.81 KB | 8f4b157c040055de4f5f13c2a1814c0e |
| ENCFF629EAD.tabix.bed.gz.dvc | 105.0 B | e3559d6aaf3f9a0cf533396ffb3c371f |
| ENCFF629EAD.tabix.bed.gz.tbi | 44.19 KB | b91e658a19d5a76b19f4622762d6ee42 |
| ENCFF629EAD.tabix.bed.gz.tbi.dvc | 109.0 B | c806adb922a6b95c23f817ae9f53c260 |
| genomic_resource.yaml | 4.45 KB | aebd754c7262e42c6a9f6f571979c8e0 |
| genomic_resource_original.yaml | 4.29 KB | 15b27c6b40facbec123e718b14d4f749 |
| statistics/ |