| Id: | TF_ChIP-seq/ENCSR233FJO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR233FJO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D" and target="ZNF280D"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN773CRE|/analyses/ENCAN773CRE/} has in progress subobject document {989f8e25-96b5-4026-912e-feea990178e7|/documents/989f8e25-96b5-4026-912e-feea990178e7/} audit_internal_action: Released analysis {ENCAN773CRE|/analyses/ENCAN773CRE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF164THF|/files/ENCFF164THF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF164THF|/files/ENCFF164THF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF062SPX|/files/ENCFF062SPX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF062SPX|/files/ENCFF062SPX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR233FJO | float |
TF_ChIP-seq_ENCSR233FJO |
TF_ChIP-seq ENCSR233FJO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D" and target="ZNF280D"]
|
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[16.6, 544] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF413OMR.bed.gz | 359.52 KB | 74185d49903d4832324d76bcb854e2d6 |
| ENCFF413OMR.bed.gz.dvc | 100.0 B | 89ba6a35775abfdd921c48c0c606238c |
| ENCFF413OMR.tabix.bed.gz | 284.43 KB | a2f18d1eea75580f26d2459a819f1d08 |
| ENCFF413OMR.tabix.bed.gz.dvc | 106.0 B | 72a126bbdeb7d597492644f089b61693 |
| ENCFF413OMR.tabix.bed.gz.tbi | 109.76 KB | b93f3ddc63a32b6ee3a7d8b75abe708b |
| ENCFF413OMR.tabix.bed.gz.tbi.dvc | 110.0 B | 88837bbc9bb326b5dcb684a4c657f8f3 |
| genomic_resource.yaml | 4.46 KB | 10b974f676e43e8995f56aafdfd0cae1 |
| genomic_resource_original.yaml | 4.29 KB | ece1131caef95aa9b76774fc9c8b2694 |
| statistics/ |