TF_ChIP-seq_ENCSR232AAR
TF_ChIP-seq ENCSR232AAR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42" and target="ZBTB42"]
×
| Id: | TF_ChIP-seq/ENCSR232AAR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR232AAR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42" and target="ZBTB42"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN132NAS|/analyses/ENCAN132NAS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN132NAS|/analyses/ENCAN132NAS/} has in progress subobject document {5453d90b-b88a-4bfe-b085-6c20b3f05a09|/documents/5453d90b-b88a-4bfe-b085-6c20b3f05a09/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF602NKY|/files/ENCFF602NKY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF602NKY|/files/ENCFF602NKY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF839DAN|/files/ENCFF839DAN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF839DAN|/files/ENCFF839DAN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.70. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR232AAR | float |
TF_ChIP-seq_ENCSR232AAR |
TF_ChIP-seq ENCSR232AAR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42" and target="ZBTB42"]
|
|
[9.42, 472] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF696QTC.bed.gz | 169.97 KB | 6d5719d2626b7bb63919cc411ffde71d |
| ENCFF696QTC.bed.gz.dvc | 100.0 B | eed83415f30bb5051d34b87aa0ef87a3 |
| ENCFF696QTC.tabix.bed.gz | 133.49 KB | 7d9464582d0a157ce79a650823069867 |
| ENCFF696QTC.tabix.bed.gz.dvc | 106.0 B | 606f728a2700aab2ea759b69262abfa3 |
| ENCFF696QTC.tabix.bed.gz.tbi | 61.5 KB | 1d9b72a5bf535e38598cf0ecf3b1ecb2 |
| ENCFF696QTC.tabix.bed.gz.tbi.dvc | 109.0 B | a80ceb24a3230f56caf50db5ada4b85d |
| genomic_resource.yaml | 4.45 KB | cd7bb1876e059f52742eeb3a04e98908 |
| genomic_resource_original.yaml | 4.29 KB | 07475e12ee89f94007d4686b295b95a1 |
| statistics/ |