TF_ChIP-seq_ENCSR231ZVN
TF_ChIP-seq ENCSR231ZVN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"]
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| Id: | TF_ChIP-seq/ENCSR231ZVN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR231ZVN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN217FFN|/analyses/ENCAN217FFN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN217FFN|/analyses/ENCAN217FFN/} has in progress subobject document {b866b165-d70b-441b-b1c4-5893aef3d019|/documents/b866b165-d70b-441b-b1c4-5893aef3d019/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF528WEZ|/files/ENCFF528WEZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF528WEZ|/files/ENCFF528WEZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF477SPR|/files/ENCFF477SPR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF477SPR|/files/ENCFF477SPR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR231ZVN | float |
TF_ChIP-seq_ENCSR231ZVN |
TF_ChIP-seq ENCSR231ZVN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"]
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[17.1, 5.2e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF504WWL.bed.gz | 194.68 KB | 5e9d552fcba61bc88a31d6fe74a9bece |
| ENCFF504WWL.bed.gz.dvc | 100.0 B | 74ead645e4b743603281e002e940da2a |
| ENCFF504WWL.tabix.bed.gz | 136.09 KB | 3c323d5ef4cddf51ab30077e269eca4e |
| ENCFF504WWL.tabix.bed.gz.dvc | 106.0 B | 7d4d9a3b85811debd9ef7d82b16030a2 |
| ENCFF504WWL.tabix.bed.gz.tbi | 89.04 KB | 0f3a86a0cf393d636446cd4e626f346c |
| ENCFF504WWL.tabix.bed.gz.tbi.dvc | 109.0 B | bab2f865b486e8df0b956f9df17140c6 |
| genomic_resource.yaml | 4.45 KB | 049e4c9c839e92e37e740418f98c4c44 |
| genomic_resource_original.yaml | 4.29 KB | 2ee91f56843ef08834759bbc2c719bea |
| statistics/ |