TF_ChIP-seq_ENCSR231NMZ
TF_ChIP-seq ENCSR231NMZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF567" and target="ZNF567"]
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| Id: | TF_ChIP-seq/ENCSR231NMZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR231NMZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF567" and target="ZNF567"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF567 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN040EJJ|/analyses/ENCAN040EJJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033TRH|/files/ENCFF033TRH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033TRH|/files/ENCFF033TRH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.81. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF276LVR|/files/ENCFF276LVR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF276LVR|/files/ENCFF276LVR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.53. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF451IBG|/files/ENCFF451IBG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.39 and a self consistency ratio of 2.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR231NMZ | float |
TF_ChIP-seq_ENCSR231NMZ |
TF_ChIP-seq ENCSR231NMZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF567" and target="ZNF567"]
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[11.5, 290] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF451IBG.bed.gz | 183.02 KB | 936b596c8c2fc3c34d9ac566a535a43e |
| ENCFF451IBG.bed.gz.dvc | 100.0 B | 8a8023c720d429505bad22b1a9c6a935 |
| ENCFF451IBG.tabix.bed.gz | 142.3 KB | 0afad2b8b151c05e8a25e912ad12e14b |
| ENCFF451IBG.tabix.bed.gz.dvc | 106.0 B | e8565bf97a3f15011d966015746a17e6 |
| ENCFF451IBG.tabix.bed.gz.tbi | 67.51 KB | a0cf57333866457364cb056a45c68829 |
| ENCFF451IBG.tabix.bed.gz.tbi.dvc | 109.0 B | add26cf8ada7fd6e437cbea58a6ea1e5 |
| genomic_resource.yaml | 4.76 KB | 33c56da067e3a42f10e24596d5778c7d |
| genomic_resource_original.yaml | 4.59 KB | 51bfc93c9b27d36bdf1fd8d3d6d4ea16 |
| statistics/ |