TF_ChIP-seq_ENCSR231CZR
TF_ChIP-seq ENCSR231CZR [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SOX15" and target="SOX15"]
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| Id: | TF_ChIP-seq/ENCSR231CZR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR231CZR [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SOX15" and target="SOX15"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SOX15 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN932EPK|/analyses/ENCAN932EPK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF286XSK|/files/ENCFF286XSK/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF286XSK|/files/ENCFF286XSK/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF318JLT|/files/ENCFF318JLT/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF318JLT|/files/ENCFF318JLT/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR231CZR | float |
TF_ChIP-seq_ENCSR231CZR |
TF_ChIP-seq ENCSR231CZR [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SOX15" and target="SOX15"]
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[18.7, 298] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF812XUO.bed.gz | 3.43 KB | bc9d13fd65b235cd00f4c37aea00c470 |
| ENCFF812XUO.bed.gz.dvc | 98.0 B | 361cea566c671083a56e0b5e54b6ca0a |
| ENCFF812XUO.tabix.bed.gz | 2.12 KB | 195ce5ebe0e257c57255bdf28d0c7ff0 |
| ENCFF812XUO.tabix.bed.gz.dvc | 104.0 B | ef225d1887d8a9ee6cc91152fbf4d247 |
| ENCFF812XUO.tabix.bed.gz.tbi | 5.53 KB | 7247659d21e593da8f6eb51c16f090a0 |
| ENCFF812XUO.tabix.bed.gz.tbi.dvc | 108.0 B | 96abae32f7240b80f62e0d6c8ac51b53 |
| genomic_resource.yaml | 4.23 KB | da393d14328d82a7637bb92ad7ba1060 |
| genomic_resource_original.yaml | 4.07 KB | 3b2e8e2ff0f043373dc7b31644c96d09 |
| statistics/ |