TF_ChIP-seq_ENCSR230ZWH
TF_ChIP-seq ENCSR230ZWH [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="RAD21"]
×
| Id: | TF_ChIP-seq/ENCSR230ZWH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR230ZWH [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN232EGA|/analyses/ENCAN232EGA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF295GOD|/files/ENCFF295GOD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF285HJN|/files/ENCFF285HJN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF232KLY|/files/ENCFF232KLY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR230ZWH | float |
TF_ChIP-seq_ENCSR230ZWH |
TF_ChIP-seq ENCSR230ZWH [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="RAD21"]
|
|
[10.3, 811] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF295GOD.bed.gz | 1.39 MB | e50fba920f9d445b01aa16efa5c27456 |
| ENCFF295GOD.bed.gz.dvc | 101.0 B | 53dff235ab5922efe18a71637e031a32 |
| ENCFF295GOD.tabix.bed.gz | 1.01 MB | 9dedf885b22ab2505487b19522b91cbd |
| ENCFF295GOD.tabix.bed.gz.dvc | 107.0 B | 2bff129846d80e9b5db45b61a84437be |
| ENCFF295GOD.tabix.bed.gz.tbi | 401.22 KB | 4d6328cceba8ec8e7dde5bd9b297a93a |
| ENCFF295GOD.tabix.bed.gz.tbi.dvc | 110.0 B | 01c71cb59d5944754d3cded4b5ee35b1 |
| genomic_resource.yaml | 2.93 KB | c5ab8422635a7a71272e02f345d819d6 |
| genomic_resource_original.yaml | 2.81 KB | f5bc5c4760cfcc6c56d12a59a7167297 |
| statistics/ |