| Id: | TF_ChIP-seq/ENCSR229DYF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR229DYF [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26" and target="ZBTB26"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN408RXJ|/analyses/ENCAN408RXJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF502RYW|/files/ENCFF502RYW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF502RYW|/files/ENCFF502RYW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.32. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR229DYF | float |
TF_ChIP-seq_ENCSR229DYF |
TF_ChIP-seq ENCSR229DYF [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26" and target="ZBTB26"]
|
 |
[21.1, 1e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF462ZZD.bed.gz | 630.25 KB | fe7772dff49340b12a501e61123da918 |
| ENCFF462ZZD.bed.gz.dvc | 100.0 B | 5467b3b5a14c2b270df1898a8bf1cc35 |
| ENCFF462ZZD.tabix.bed.gz | 366.75 KB | 0ce83f35720130e4b0467e676262be14 |
| ENCFF462ZZD.tabix.bed.gz.dvc | 106.0 B | d5148ddc5aad58dc69682cb3f2ae98b4 |
| ENCFF462ZZD.tabix.bed.gz.tbi | 141.9 KB | 110cac910630025cf60e78bf991e8408 |
| ENCFF462ZZD.tabix.bed.gz.tbi.dvc | 110.0 B | 6ce1255d23924d75d071e5bafe897144 |
| genomic_resource.yaml | 3.07 KB | 9cf4dd42573ad58dbc8d18e0495363f8 |
| genomic_resource_original.yaml | 2.88 KB | 37873d15e08158fb2d900fad0d74837e |
| statistics/ |