TF_ChIP-seq_ENCSR228ZYW
TF_ChIP-seq ENCSR228ZYW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"]
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| Id: | TF_ChIP-seq/ENCSR228ZYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR228ZYW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN312EII|/analyses/ENCAN312EII/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN312EII|/analyses/ENCAN312EII/} has replaced subobject file {f43488f7-8606-4473-bf9f-fcc964bc696e|/files/f43488f7-8606-4473-bf9f-fcc964bc696e/} audit_internal_action: Released analysis {ENCAN312EII|/analyses/ENCAN312EII/} has in progress subobject document {2573d548-03f0-4624-a5a4-a37903ce43ea|/documents/2573d548-03f0-4624-a5a4-a37903ce43ea/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF659VOU|/files/ENCFF659VOU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF659VOU|/files/ENCFF659VOU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.20. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF068OXH|/files/ENCFF068OXH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF068OXH|/files/ENCFF068OXH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.27. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF861MUF|/files/ENCFF861MUF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 4.08. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF370LZV|/files/ENCFF370LZV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 4.08. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR228ZYW | float |
TF_ChIP-seq_ENCSR228ZYW |
TF_ChIP-seq ENCSR228ZYW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"]
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[10.4, 267] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861MUF.bed.gz | 195.39 KB | e984df859c08639f2c9d9e1b6ba43d29 |
| ENCFF861MUF.bed.gz.dvc | 100.0 B | aa0e5cc7e51217be9207a5a8241eab5d |
| ENCFF861MUF.tabix.bed.gz | 156.13 KB | 244bc4270c8a7f9aa33b25afdf432264 |
| ENCFF861MUF.tabix.bed.gz.dvc | 106.0 B | 490cd715fbd341044d4b0d6ab7720f16 |
| ENCFF861MUF.tabix.bed.gz.tbi | 68.53 KB | 8fa31cf528adc4e7a69c67d81c3a6b27 |
| ENCFF861MUF.tabix.bed.gz.tbi.dvc | 109.0 B | ef90ad0286478e32f19d7d3b6a3d4076 |
| genomic_resource.yaml | 5.69 KB | 0690a0ba61bb0cbca7d55b8a2bea7595 |
| genomic_resource_original.yaml | 5.52 KB | d469a699a22f0a28e05171b3bee3f51f |
| statistics/ |