| Id: | TF_ChIP-seq/ENCSR228PGT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR228PGT [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF292" and target="ZNF292"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF292 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN964UFJ|/analyses/ENCAN964UFJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN964UFJ|/analyses/ENCAN964UFJ/} has in progress subobject document {7066834a-f71f-4bd7-807f-6412d17ce8b9|/documents/7066834a-f71f-4bd7-807f-6412d17ce8b9/} audit_warning: Processed alignments file {ENCFF602MXY|/files/ENCFF602MXY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 14875772 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF292-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF992KBL|/files/ENCFF992KBL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF460VUS|/files/ENCFF460VUS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR228PGT | float |
TF_ChIP-seq_ENCSR228PGT |
TF_ChIP-seq ENCSR228PGT [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF292" and target="ZNF292"]
|
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[8.81, 229] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF992KBL.bed.gz | 34.91 KB | 6907f67c9827e831be450388776ce310 |
| ENCFF992KBL.bed.gz.dvc | 99.0 B | b545a89f8f023022b8eea23f48a14340 |
| ENCFF992KBL.tabix.bed.gz | 22.4 KB | 5c052f4e39d06b2d98316733e1f2cbc0 |
| ENCFF992KBL.tabix.bed.gz.dvc | 105.0 B | ef1f6d57a7c35df6792cd83fc7cd6701 |
| ENCFF992KBL.tabix.bed.gz.tbi | 23.37 KB | 4b4052d6607f46d99005bebf23ba2f8b |
| ENCFF992KBL.tabix.bed.gz.tbi.dvc | 109.0 B | ad0c2e507f1a0131a913949150d65772 |
| genomic_resource.yaml | 3.55 KB | 4df592ecdfe035ea65cc69e6b5a4e280 |
| genomic_resource_original.yaml | 3.37 KB | af6b711c2cb0eb1a78bdd58b6f1eb636 |
| statistics/ |