TF_ChIP-seq_ENCSR228ELU
TF_ChIP-seq ENCSR228ELU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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| Id: | TF_ChIP-seq/ENCSR228ELU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR228ELU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN608XQR|/analyses/ENCAN608XQR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF932FOK|/files/ENCFF932FOK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF932FOK|/files/ENCFF932FOK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF872HPF|/files/ENCFF872HPF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF872HPF|/files/ENCFF872HPF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR228ELU | float |
TF_ChIP-seq_ENCSR228ELU |
TF_ChIP-seq ENCSR228ELU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1" and target="TEAD1"]
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[12.6, 811] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF214SNH.bed.gz | 322.76 KB | a864ccf68ff3ca9e7539f90ef7208260 |
| ENCFF214SNH.bed.gz.dvc | 100.0 B | 4c801eb1da7cf62b4ca5f2a6527f5382 |
| ENCFF214SNH.tabix.bed.gz | 250.5 KB | 93aa0e752542f2ccd071d07a5a672090 |
| ENCFF214SNH.tabix.bed.gz.dvc | 106.0 B | 1084261ca5fc2502d0b2e1507984d396 |
| ENCFF214SNH.tabix.bed.gz.tbi | 104.52 KB | 54c6ce6516329d67dffe47090e3ffe48 |
| ENCFF214SNH.tabix.bed.gz.tbi.dvc | 110.0 B | 100f0bf88656ad31623bb7658ce7483f |
| genomic_resource.yaml | 4.23 KB | 5daec1b7ceb82507817379cca0caf94b |
| genomic_resource_original.yaml | 4.07 KB | 1d3b4d680a24acb925a05d7ddcf6a295 |
| statistics/ |