TF_ChIP-seq_ENCSR227MRE
TF_ChIP-seq ENCSR227MRE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B" and target="KDM5B"]
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| Id: | TF_ChIP-seq/ENCSR227MRE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR227MRE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B" and target="KDM5B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN602WGQ|/analyses/ENCAN602WGQ/} has in progress subobject document {60a78dcc-0bbc-4f18-be55-956614eb8a15|/documents/60a78dcc-0bbc-4f18-be55-956614eb8a15/} audit_internal_action: Released analysis {ENCAN602WGQ|/analyses/ENCAN602WGQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF800TJK|/files/ENCFF800TJK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF800TJK|/files/ENCFF800TJK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF595TJC|/files/ENCFF595TJC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 3.91. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF706LUI|/files/ENCFF706LUI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 3.91. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR227MRE | float |
TF_ChIP-seq_ENCSR227MRE |
TF_ChIP-seq ENCSR227MRE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B" and target="KDM5B"]
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[15.1, 600] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF595TJC.bed.gz | 488.75 KB | 04ee717ab9b70680ce8c47f27018206f |
| ENCFF595TJC.bed.gz.dvc | 100.0 B | 5941acaa154cc9af73dc7de310260d99 |
| ENCFF595TJC.tabix.bed.gz | 422.35 KB | e7223f7a1b3431ba8ab22071763ae633 |
| ENCFF595TJC.tabix.bed.gz.dvc | 106.0 B | 148625c1bbbe5328d6cb1baac8be34e5 |
| ENCFF595TJC.tabix.bed.gz.tbi | 133.4 KB | 7afe52ed384ac910619567a448d954a9 |
| ENCFF595TJC.tabix.bed.gz.tbi.dvc | 110.0 B | 7e609677496717761178034772b8d79f |
| genomic_resource.yaml | 4.22 KB | f9c42e0281d009863ef75a29571e8e9c |
| genomic_resource_original.yaml | 4.06 KB | ec2db4ba50f4e1a4b1bda4bf1133816b |
| statistics/ |