TF_ChIP-seq_ENCSR226QQM
TF_ChIP-seq ENCSR226QQM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA" and target="NFIA"]
×
| Id: | TF_ChIP-seq/ENCSR226QQM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR226QQM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA" and target="NFIA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFIA output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN984TPV|/analyses/ENCAN984TPV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF368UNG|/files/ENCFF368UNG/}, {ENCFF395SAK|/files/ENCFF395SAK/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 2.45. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF249FDQ|/files/ENCFF249FDQ/}, {ENCFF718ERC|/files/ENCFF718ERC/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 2.45. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR226QQM | float |
TF_ChIP-seq_ENCSR226QQM |
TF_ChIP-seq ENCSR226QQM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA" and target="NFIA"]
|
|
[10.2, 639] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718ERC.bed.gz | 494.96 KB | 08c3d2355f67b2d2015cd4a72acae833 |
| ENCFF718ERC.bed.gz.dvc | 100.0 B | a3337e2b468b889878e02b188ffad25e |
| ENCFF718ERC.tabix.bed.gz | 378.24 KB | 6a31be4f6284445c218c030f91ea80e5 |
| ENCFF718ERC.tabix.bed.gz.dvc | 106.0 B | a21fc1dedec7a787da0545fe15494673 |
| ENCFF718ERC.tabix.bed.gz.tbi | 171.17 KB | c55192963eb321756d65d303959c6df6 |
| ENCFF718ERC.tabix.bed.gz.tbi.dvc | 110.0 B | aa190b87a9df52b92a49433eb4d7602e |
| genomic_resource.yaml | 2.79 KB | 43ba5ced16243d51ebd44f38022be64d |
| genomic_resource_original.yaml | 2.63 KB | cf052c09d1993d1a33819a5163efe32b |
| statistics/ |