TF_ChIP-seq_ENCSR225KOS
TF_ChIP-seq ENCSR225KOS [biosample_summary="Homo sapiens brain organoid, 180 days post differentiation" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR225KOS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR225KOS [biosamplesummary="Homo sapiens brain organoid, 180 days post differentiation" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: brain organoid 180 days post differentiation output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN103MBT|/analyses/ENCAN103MBT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF227BHW|/files/ENCFF227BHW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF227BHW|/files/ENCFF227BHW/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR225KOS | float |
TF_ChIP-seq_ENCSR225KOS |
TF_ChIP-seq ENCSR225KOS [biosample_summary="Homo sapiens brain organoid, 180 days post differentiation" and target="CTCF"]
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[4.89, 616] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF190FEC.bed.gz | 1.3 MB | 498b34f36cbc57a8a3493b8c3ff286da |
| ENCFF190FEC.bed.gz.dvc | 101.0 B | 8001aeda1f8b1626d5fc4dd3e87d137b |
| ENCFF190FEC.tabix.bed.gz | 811.66 KB | b3080cdf046c963b425e16262ac7a2fa |
| ENCFF190FEC.tabix.bed.gz.dvc | 106.0 B | dbaa21e858bbf301368080d9a50296df |
| ENCFF190FEC.tabix.bed.gz.tbi | 324.95 KB | 023998b8b32d7f5adb1c3f10181325c0 |
| ENCFF190FEC.tabix.bed.gz.tbi.dvc | 110.0 B | 17a8a9e502019be3cb73379b3216e380 |
| genomic_resource.yaml | 2.79 KB | 6b1a5d51f1f2a70f6e489d08cc92c60a |
| genomic_resource_original.yaml | 2.66 KB | 3cbd5263dac16fe3edc87a22cce1280f |
| statistics/ |