TF_ChIP-seq_ENCSR223MLH
TF_ChIP-seq ENCSR223MLH [biosample_summary="Homo sapiens K562" and target="BRCA1"]
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| Id: | TF_ChIP-seq/ENCSR223MLH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR223MLH [biosamplesummary="Homo sapiens K562" and target="BRCA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN396RBI|/analyses/ENCAN396RBI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN396RBI|/analyses/ENCAN396RBI/} has in progress subobject document {9d677a51-6301-4ed1-b4fa-d3f7604719b1|/documents/9d677a51-6301-4ed1-b4fa-d3f7604719b1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF488YOW|/files/ENCFF488YOW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF488YOW|/files/ENCFF488YOW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.32. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305RZF|/files/ENCFF305RZF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305RZF|/files/ENCFF305RZF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR223MLH | float |
TF_ChIP-seq_ENCSR223MLH |
TF_ChIP-seq ENCSR223MLH [biosample_summary="Homo sapiens K562" and target="BRCA1"]
|
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[15.4, 8.64e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF258GDS.bed.gz | 9.26 KB | bc92246c5ee2ee0f8686ea4242bedf84 |
| ENCFF258GDS.bed.gz.dvc | 98.0 B | 0db352d721ad90bb001513640669ee36 |
| ENCFF258GDS.tabix.bed.gz | 6.17 KB | ee893f4bff98e5c21be5f7cfde41ecef |
| ENCFF258GDS.tabix.bed.gz.dvc | 104.0 B | 8ffc16e71f9b75656f290e856745382e |
| ENCFF258GDS.tabix.bed.gz.tbi | 6.23 KB | 7ab737c7a76a89daaa13ef8b840bfad8 |
| ENCFF258GDS.tabix.bed.gz.tbi.dvc | 108.0 B | e2457cea22c2e4f0b45d96a33c2d55b3 |
| genomic_resource.yaml | 4.3 KB | 1bdfc3a43a5d9fa1689f9a1428392b21 |
| genomic_resource_original.yaml | 4.21 KB | d8bc995256852616676cc96b0f009f7e |
| statistics/ |