TF_ChIP-seq_ENCSR222TVA
TF_ChIP-seq ENCSR222TVA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF785" and target="ZNF785"]
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| Id: | TF_ChIP-seq/ENCSR222TVA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR222TVA [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF785" and target="ZNF785"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF785 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN131PTH|/analyses/ENCAN131PTH/} has in progress subobject document {a0757bc1-2503-46a5-abb5-ca0b42a92619|/documents/a0757bc1-2503-46a5-abb5-ca0b42a92619/} audit_internal_action: Released analysis {ENCAN131PTH|/analyses/ENCAN131PTH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF968ECF|/files/ENCFF968ECF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF968ECF|/files/ENCFF968ECF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF883KKE|/files/ENCFF883KKE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF883KKE|/files/ENCFF883KKE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR222TVA | float |
TF_ChIP-seq_ENCSR222TVA |
TF_ChIP-seq ENCSR222TVA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF785" and target="ZNF785"]
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[17, 627] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF352NGK.bed.gz | 11.4 KB | c68a5650b3502f93da64c88471c8d341 |
| ENCFF352NGK.bed.gz.dvc | 99.0 B | ace1a5b076ed00e64f0d2f51c09169e3 |
| ENCFF352NGK.tabix.bed.gz | 7.24 KB | dfd7f6fdf0f0576bf92d9c8cec546419 |
| ENCFF352NGK.tabix.bed.gz.dvc | 104.0 B | 5fba54a4a724f55027f9e34549933769 |
| ENCFF352NGK.tabix.bed.gz.tbi | 9.87 KB | 5fa87d8ed017b9fb8bb218beefb246a2 |
| ENCFF352NGK.tabix.bed.gz.tbi.dvc | 109.0 B | 590f875b20bb22e3060e4601da27eae9 |
| genomic_resource.yaml | 4.45 KB | 6ae8933c8c33023b65c728e57622435b |
| genomic_resource_original.yaml | 4.28 KB | 743ad38ff5fa2c91b23d4828f62cc343 |
| statistics/ |